Summary for all QBiC technical documentation
Welcome to QBiC’s technical documentation pages.
Project reports are generated automatically during builds, while this summary is generated daily. So come back often to get the latest reports.
No description available for attachi-cli.
GitHub link: https://github.com/qbicsoftware/attachi-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Scripts to create barcodes for tagging samples
GitHub link: https://github.com/qbicsoftware/barcode-creation
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
No description available for barcode-dragon-portlet.
GitHub link: https://github.com/qbicsoftware/barcode-dragon-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Collection of cookiecutter templates to generate new portlets, libraries, utilities, etc., using our parent POM structure.
GitHub link: https://github.com/qbicsoftware/cookiecutter-templates-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Library containing core classes and utilities that are independent of a portal.
GitHub link: https://github.com/qbicsoftware/core-utils-lib
Libraries providing functionality for the QBiC/openBIS data model
GitHub link: https://github.com/qbicsoftware/data-model-lib
No description available for dropboxhandler.
GitHub link: https://github.com/qbicsoftware/dropboxhandler
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Reports stuff that has happened on a particular day, based on the logs.
GitHub link: https://github.com/qbicsoftware/dropboxreporter
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
TCP-based python data transfer client and server using ZeroMQ
GitHub link: https://github.com/qbicsoftware/dync-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
ETL scripts written in Jython 2.7 for openBIS dropboxes.
GitHub link: https://github.com/qbicsoftware/etl-scripts
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
No description available for example-osgi-library.
GitHub link: https://github.com/qbicsoftware/example-osgi-library
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
No description available for example-osgi-portlet.
GitHub link: https://github.com/qbicsoftware/example-osgi-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Prototype of new experiment creation and import portlet
GitHub link: https://github.com/qbicsoftware/experiment-creation-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Stand alone version of the d3 experiment graph
GitHub link: https://github.com/qbicsoftware/experiment-graph-gui
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Parsers, writers for experimental design formats etc.
GitHub link: https://github.com/qbicsoftware/experimental-design-lib
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Extracts data from openBIS and (semi-)automizes the data upload
GitHub link: https://github.com/qbicsoftware/geo-uploader-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Maven plugin to allow for inclusion of Gmavenplus generated Groovydocs in project-reports.html
GitHub link: https://github.com/qbicsoftware/groovydoc-maven-plugin
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
html2pdf. A proof-of-concept HTML to PDF conversion tool.
GitHub link: https://github.com/qbicsoftware/html2pdf-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
No description available for icgc-features.
GitHub link: https://github.com/qbicsoftware/icgc-features
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran, David Johnson and Philippe Rocca-Serra (Uni. of Oxford).
GitHub link: https://github.com/qbicsoftware/isa-creator-lib
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Provides a Java API to use the JavaScript library d3.js with the JavaFx WebView
GitHub link: https://github.com/qbicsoftware/javafx-d3-lib
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
JavaFX-related utilities
GitHub link: https://github.com/qbicsoftware/javafx-utils-lib
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Collection of metadata sheets for QBiC projects
GitHub link: https://github.com/qbicsoftware/metadata-doc
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
QBiC’s metadata model specification
GitHub link: https://github.com/qbicsoftware/metadata-model-specification
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Creates a metadata table for an openBIS project for statistical analysis
GitHub link: https://github.com/qbicsoftware/metastats-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Describes the properties of a QBiC MetaStats object model
GitHub link: https://github.com/qbicsoftware/metastats-object-model
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
A small util library for shared objects in Micronaut-based projects at QBiC.
GitHub link: https://github.com/qbicsoftware/micronaut-utils-lib
A Python command line tool that parses and converts diagnostic variant data for the Molecular Tumor Board at UKT Tübingen.
GitHub link: https://github.com/qbicsoftware/mtb-converter-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
A simple module for diagnostic variant information parsing
GitHub link: https://github.com/qbicsoftware/mtb-parser-lib
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
A command-line application for validating Oxford Nanopore folder structures.
GitHub link: https://github.com/qbicsoftware/nanopore-parser-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
No description available for ncct-style.
GitHub link: https://github.com/qbicsoftware/ncct-style
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Consumes Nextflow weblog payloads via Http REST and stores them in a database.
GitHub link: https://github.com/qbicsoftware/nextflow-logger-service
A description how to build a slim JAVA omero-importer CLI, without installing OMERO.server
GitHub link: https://github.com/qbicsoftware/omero-importer-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Conda recipe for the Java omero importer cli
GitHub link: https://github.com/qbicsoftware/omero-importer-recipe
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Java-based library to connect to the OMERO server
GitHub link: https://github.com/qbicsoftware/omero-lib
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Vaadin portlet for qPortal that displays image (meta)data.
GitHub link: https://github.com/qbicsoftware/omero-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Python bindings for OMERO server API 5.4.6
GitHub link: https://github.com/qbicsoftware/omero-py-lib
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
The Variantstore is a Java/Groovy-based service application implemented using the Micronaut framework and enables storage and access to information on genomic variants and metadata from a connected database via a RESTful API.
GitHub link: https://github.com/qbicsoftware/oncostore-proto-project
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
No description available for openbis-client-lib.
GitHub link: https://github.com/qbicsoftware/openbis-client-lib
Small portlet to test connection problems
GitHub link: https://github.com/qbicsoftware/openbis_connection_tester
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
We keep all parent POMs under this single repository.
GitHub link: https://github.com/qbicsoftware/parent-poms
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Liferay and Vaadin utilities that are quite handy to have when doing portal development.
GitHub link: https://github.com/qbicsoftware/portal-utils-lib
A client software for dataset request and download from openBIS
GitHub link: https://github.com/qbicsoftware/postman-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Core libraries providing utilities for the download of OpenBIS files and datasets
GitHub link: https://github.com/qbicsoftware/postman-core-lib
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Support power analysis and sample size estimation of DNA microarray and RNA-Seq experimental designs
GitHub link: https://github.com/qbicsoftware/power-analysis-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Maintaining and updating printer project associations and label printer locations
GitHub link: https://github.com/qbicsoftware/printer-garden-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
No description available for project-manager.
GitHub link: https://github.com/qbicsoftware/project-manager
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
A project manager portlet
GitHub link: https://github.com/qbicsoftware/project-manager-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
QBiC Project Browser enables users to browse and manage their projects. Further, users can run analysis pipelines on registered data.
GitHub link: https://github.com/qbicsoftware/projectbrowser-portlet
QBiC Project Wizard enables users to create hierarchical experiments including different study conditions using factorial design.
GitHub link: https://github.com/qbicsoftware/projectwizard-portlet
Python-based library for data processing operations
GitHub link: https://github.com/qbicsoftware/python-data-lib
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
QBiC technical documentation, such as API docs.
GitHub link: https://github.com/qbicsoftware/qbic-docs
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
A repository to hold the code used for pipeline integration testing for nf-core/rnaseq and scilifelab/Sarek at QBIC.
GitHub link: https://github.com/qbicsoftware/qbic-pipeline-integration-testing
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
The existing portlet https://github.com/qbicsoftware/UserDBTools is migrated to our portlet-templaet structure based on maven.
GitHub link: https://github.com/qbicsoftware/qbic-portlet-userdbtools
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Password reset daemon for QBiC services
GitHub link: https://github.com/qbicsoftware/qbic-pwresetd
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Documentation collection and resources about setup guides of application servers
GitHub link: https://github.com/qbicsoftware/qbic-setup-doc
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Portlet for workflow functionality containing admin panel and workflow monitor
GitHub link: https://github.com/qbicsoftware/qflow
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
qOffer assists in managing and creating offers
GitHub link: https://github.com/qbicsoftware/qoffer-2-portlet
We’re sorry, there are no available release reports for this project. Come back soon!
QBiC offer generator aims to fulfill quotation preparation processes in a fully automatised fashion.
GitHub link: https://github.com/qbicsoftware/qoffer-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Collection of QBiC’s internal project templates
GitHub link: https://github.com/qbicsoftware/qube-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
A collection of project-related Dockerfiles for a controlled R environment with defined R packages
GitHub link: https://github.com/qbicsoftware/r-container-lib
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
A collection of project-related R scripts with defined package lists and Dockerfiles for reproducible R environments
GitHub link: https://github.com/qbicsoftware/r-container-template
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
No description available for reporting-scripts.
GitHub link: https://github.com/qbicsoftware/reporting-scripts
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Repository wizard RepoWiz helps to make your data publicly available
GitHub link: https://github.com/qbicsoftware/repowiz-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
A small linting command line tool for R container evaluation
GitHub link: https://github.com/qbicsoftware/rmageddon-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Performs post registration tasks after samples have been registered in openBIS, using the openBIS API. To be used as a cron job.
GitHub link: https://github.com/qbicsoftware/sample-status-updater-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
An easy to use interface providing sample tracking update functions for ETL scripts
GitHub link: https://github.com/qbicsoftware/sample-tracking-helper-lib
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Service that implements a sample tracking interface.
GitHub link: https://github.com/qbicsoftware/sample-tracking-service
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Portlet to query satus, location and general information of samples
GitHub link: https://github.com/qbicsoftware/sample-tracking-status-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Portlet to update sample status, location and general information
GitHub link: https://github.com/qbicsoftware/sample-tracking-update-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Various python scripts for bioinformatics data analysis and pre-processing
GitHub link: https://github.com/qbicsoftware/sarek-starter-cli
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
No description available for scark-cli.
GitHub link: https://github.com/qbicsoftware/scark-cli
A portlet to test services related libraries
GitHub link: https://github.com/qbicsoftware/services-testing-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
No description available for spark-service.
GitHub link: https://github.com/qbicsoftware/spark-service
This tools is responsible for data retrieval and formatting, in order to visualize data on our homepage.
GitHub link: https://github.com/qbicsoftware/statistics-cli
We’re sorry, there are no available release reports for this project. Come back soon!
This repo contains shared classes between the qbic-statistics portlet and the statistics-data-retrieval repo
GitHub link: https://github.com/qbicsoftware/statistics-plugin
We’re sorry, there are no available release reports for this project. Come back soon!
No description available for statistics-portlet.
GitHub link: https://github.com/qbicsoftware/statistics-portlet
We’re sorry, there are no available release reports for this project. Come back soon!
This repository holds a collection of scripts, which use the Trello API to easily access the information stored on a Trello Board
GitHub link: https://github.com/qbicsoftware/trello-script
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
A portlet that generates patient and sample IDs per request for UKT diagnostics purposes
GitHub link: https://github.com/qbicsoftware/ukt-diagnostics-id-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
User DB Tools Portlet enables users to add people and affiliations to the SQL user database.
GitHub link: https://github.com/qbicsoftware/user-db-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
A portlet for the interactive design of individualized vaccines
GitHub link: https://github.com/qbicsoftware/vaccine-designer-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Live visualisation of Nextflow workflows in qPortal
GitHub link: https://github.com/qbicsoftware/workflow-dashboard-portlet
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
This is an archived version for a paper, please use https://github.com/nf-core/sarek for new projects!
GitHub link: https://github.com/qbicsoftware/workflow-sarek
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Reading and writing of specific openBIS xml properties
GitHub link: https://github.com/qbicsoftware/xml-manager-lib
We’re sorry, there are no available SNAPSHOT reports for this project. Come back soon!
We’re sorry, there are no available release reports for this project. Come back soon!
Last update: 14 January 2021, 4:26 hrs.