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QBiC Project Wizard enables users to create hierarchical experiments including different study conditions using factorial design.
Copyright (C) "2016" Andreas Friedrich
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see
Modifiers | Name | Description |
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java.lang.String |
primaryTissue |
|
java.lang.String |
tissueDetailed |
Fields inherited from class | Fields |
---|---|
class AOpenbisSample |
Q_ADDITIONAL_NOTES, Q_EXTERNALDB_ID, Q_SECONDARY_NAME, code, experiment, factors, parent, parents, sampleType, space, tempID, tempParentIDs |
Constructor and description |
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OpenbisBiologicalSample
(java.lang.String openbisName, java.lang.String space, java.lang.String experiment, java.lang.String secondaryName, java.lang.String additionalNotes, java.util.List<life.qbic.xml.properties.Property> factors, java.lang.String primaryTissue, java.lang.String tissueDetailed, java.lang.String parent, java.lang.String extID) Create a new Biological Sample |
OpenbisBiologicalSample
(int tempID, java.util.List<AOpenbisSample> parents, java.lang.String primaryTissue, java.lang.String tissueDetailed, java.lang.String secondaryName, java.lang.String externalID, java.util.List<life.qbic.xml.properties.Property> newFactors, java.lang.String additionalNotes) |
Type Params | Return Type | Name and description |
---|---|---|
|
java.util.Map<java.lang.String, java.lang.String> |
getValueMap() |
Methods inherited from class | Name |
---|---|
class AOpenbisSample |
addFactor, fillInFactors, getCode, getFactorLabels, getFactorStrings, getFactorStringsWithoutLabel, getFactors, getParent, getParents, getQ_ADDITIONAL_NOTES, getQ_EXTERNALDB_ID, getQ_SECONDARY_NAME, getSpace, getTempID, getTempParentIDs, getValueMap, setCode, setExperiment, setFactors, setParent, setQ_ADDITIONAL_NOTES, setQ_EXTERNALDB_ID, setQ_SECONDARY_NAME, setSampleType, setSpace, toString |
Create a new Biological Sample
openbisName
- Code of the sampleexperiment
- Experiment the sample is attached tosecondaryName
- Secondary name of the sample (e.g. humanly readable identifier)additionalNotes
- Free text notes for the samplefactors
- A list of conditions for the sampleprimaryTissue
- The primary tissue of this biological sampletissueDetailed
- Detailed tissue informationparent
- Entity parent this sample was extracted from